Termite annotation in action. (Termite not to scale) SureChEMBL is perhaps the only freely available, large-scale, comprehensive and live resource of chemistry extracted from the patent literature. SureChEMBL automatically annotates, normalises and indexes chemistry found in the full text, images and attachments (i.e. mol files) of patent documents. The next logical step for us, was to complement the chemical annotations with biological ones, such as mentions of gene names and classifications, protein classes and disease indications. As the first step towards this direction, we used Termite provided by SciBite (via funding from OpenPHACTS ) to integrate these annotations dynamically into the full text patent view of the SureChEMBL user interface; in other words, you can now view biological annotations on-the-fly. How do I add the annotations and navigate through them? There is now an additional checkbox underneath the ' Highlight additional recognised...
Blog of Chemical Biology Services at EMBL-EBI