ChEMBL 10 Released

We are pleased to announce the release of ChEMBL_10. This latest version of the ChEMBL database contains:

1,118,566 compound records
1,000,468 distinct compounds
534,391 assays
4,668,202 bioactivities
8,372 targets
40,624 documents
6 data sources

This release of the ChEMBL database contains a subset of the data from the PubChem BioAssay database. Specifically, we have included dose-response endpoints (e.g., IC₅₀, Ki, Potency) from confirmatory assays in PubChem - the aim of this is to integrate data that is comparable to the type and class of data contained within ChEMBL. This subset contains:

333,864 compound records (PubChem Substance entries)
794 assays (PubChem BioAssay assays)
1,473,189 bioactivities (IC₅₀ etc. measurements)

You can access the data via the ChEMBL database interface: http://www.ebi.ac.uk/chembldb/index.php.

Changes to the interface include:

'Activity Source Filter' link has been added to the main search bar to allow users to include/exclude activity sources (e.g. PubChem BioAssay, Literature, ...) in the current working session

Links to Wikipedia, DrugBank, PubChem and PDBe are now included in report card pages.

You can download the data from the ChEMBL ftpsite: ftp://ftp.ebi.ac.uk/pub/databases/chembl/ChEMBLdb/latest/

All other ChEMBL resources (e.g. Web Services) are also now connected to ChEMBL_10.

Comments

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